Citation

Protocol paper

If you use this workflow in a study, please cite the original protocol paper:

  • Pacheco, M. A., Cepeda, A. S., Miller, E. A., et al. (2024). A new long-read mitochondrial-genome protocol (PacBio HiFi) for haemosporidian parasites: a tool for population and biodiversity studies. Malaria Journal 23, 134. doi:10.1186/s12936-024-04961-8

Software

If you publish results obtained with this codebase, consider citing the software repository and recording the version/commit hash used for the analysis.

Suggested citation text (edit as appropriate):

Haemo Mito Pipeline (HmtG-PacBio-style) software, version X.Y.Z, GitHub repository: <URL>

External tools

This workflow relies on established third-party tools:

  • MAFFT (multiple sequence alignment)

  • BLAST+ (optional local similarity search)

Please cite these tools according to their respective publications and documentation.