Downloads

The Haemo Mito Pipeline can be used in two ways:

  1. Windows Desktop GUI (recommended for day-to-day use)

  2. Command-line workflow (recommended for automation and reproducibility)

Windows Desktop GUI

We distribute the Windows GUI as a bundled application so users do not need to install Python.

Recommended distribution method: publish the build as a GitHub Release asset.

Go to latest release All releases

When you create a release, we recommend attaching a single ZIP named like:

  • HaemoMitoPipeline_Windows.zip

That ZIP should contain the full dist/HaemoMitoPipeline/ folder produced by PyInstaller (not just the .exe).

macOS Desktop GUI

We also support a macOS desktop GUI build (a standard .app bundle).

Recommended distribution method: publish the build as a GitHub Release asset, similar to the Windows build.

Go to latest release All releases

When you create a release, we recommend attaching a single ZIP named like:

  • HaemoMitoPipeline_macOS.zip

That ZIP should contain the full dist/HaemoMitoPipeline/HaemoMitoPipeline.app bundle produced by PyInstaller.

Note

macOS may block unsigned apps. Users can usually run the app by right-clicking the .app → Open (Gatekeeper prompt).

CLI workflow

For CLI usage (or to build your own GUI executable), clone the repository and install dependencies. The CLI is also ideal for running on HPC/servers.

See:

Data + database downloads

If you distribute a curated BLAST database (blast/HmtG_database_PacBio), we strongly recommend shipping it as a separate release asset:

  • it can be updated independently of the GUI

  • it can be large

Tip: the pipeline expects a database prefix (no extension), e.g. blast/HmtG_database_PacBio.

Update these placeholders

This documentation template ships with placeholder URLs:

  • https://github.com/<GITHUB_ORG_OR_USER>/<REPO_NAME>

After you publish the repo, replace those placeholders with your real GitHub organization/user and repo name.